miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|306766258|gb|FR640888.1|FR640888 GACTACTTCGCAGGCCGCATCCCCACACAGAGGCAAGTGAGAGAAACCGCCGCACCGGAACAATGAAGTACAATCCGCGA
GTCACCTCTTCACGGCGGAAGAACCGGAAGGCTCACTTCACAGCGCCGTCGAGCGTCCGCCGTGTACTGATGAGCGCCCC
CCTCTCATCCGACCTCCGGACGAAGTACAACGTTCGATCCATGCCGGTACGCAAGGACGATGAGGTGCAAGTGGTCAGAG
GAACCTACAAGGGCCGCGAGGGTAAGGTGGTACAGGTGTACCGCAAGAAATGGGTGATCCATGTGGAGAGGATCACCAGG
GAGAAGGTTAATGGATCCACTGTGAATGTGGGGATTAACCCTTCCAAGGTTGTTATCACCAAGCTCCGCCTTGACAAGGA
CCGCAAGTCGCTTCTCGACCGCAAGGCCAAGGGACGCGCCGCCGCGGATAAGGACAAAGGTACCAAATTCACCGCCGAGG
ACATCATGCAGACCGTTGATTAGTTGGTTAATTCTCAACTACTTCGGAACCTTTGAGTTTGTTATTGTTTCTGACATTAA
ATATTTCATCTTAATTAGAGAAGAAGAGAAAAACTATGTTTCTGCTACTGCATTTGGTATTATGATGAATTTTGATTTTG
ATTTTG




Most similar to sp|P51414|RL261_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis
           thaliana GN=RPL26A PE=2 SV=2
          Length = 146

 Score =  206 bits (523), Expect = 1e-52
 Identities = 104/146 (71%), Positives = 114/146 (78%)
 Frame = +3

Query: 63  MKYNPRVTSSRRKNRKAHFTAPSSVRRVLMSAPLSSDLRTKYNVRSMPVRKDDEVQVVRG 242
           MKYNPRVTSSRRKNRKAHFTA SS RRV+MS+PLS+DLR KYNVRSMP+RKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 243 TYKGREGKVVQVYRKKWVIHVERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXX 422
           TYKGREGKVVQVYR+KWVIH+ERITREKVNG+TVNVGI PSKVVIT              
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 423 XXXXXXXXXXXXXTKFTAEDIMQTVD 500
                        TKFT+ED+MQ VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146